Gene Expression Databases
You have found the way to Databases on Gene Expression:
See also:
- Genomics@ (16)
- Proteomics@ (6)
- Science: Biology: Bioinformatics: Online Services: Genome Databases (16)
- Science: Biology: Bioinformatics: Software (80)
- Science: Biology: Genetics: Eukaryotic: Databases and Maps (3)
- Science: Biology: Genetics: Software (52)
Allen Brain Atlas - Database of gene expression patterns in the mouse brain.
ArrayExpress - Database of gene expression and other microarray data at the European Bioinformatics Institute (EBI), located at the Wellcome Trust Foundation in Cambridge, UK.
The Database of Rice Transcription Factors (DRTF) - Free of charge database of transcription factors of rice. From CBI, Peking University, China.
Exploring the Metabolic and Generic Control of Gene Expression - Database with the data for the experiments in the paper - DeRisi et. al. Science 278: 680-686. Includes text files that can be downloaded. The original paper requires a subscription fee.
Gemma - Database and software system for the meta-analysis of gene expression data.
Gene Expression in Tooth - Database on the expression of different genes in the developing tooth.
Gene Expression Omnibus - Database of gene expression data from NCBI (National Center for Biotechnical Information). Includes a definable search by different characteristics.
GeneExpress - Designed for analysis of genomic regulatory sequences of higher eukaryotes. Includes several databases and programs for visualization of the information contained. From the Laboratory of Theoretical Genetics of the Institute of Cytology and Genetics of Siberian Branch of Russian Academy of Science in Novosibirsk (Russia).
GenePaint - Database of gene expression patterns in the mouse embryo. From Max-Planck-Institute for Biophysical Chemistry, Dept. Genes and Behavior, Göttingen, Germany
GeneSifter Data Center - Database for the GeneSifter microarray data analysis system in selected conditions. From ViZxlabs, Seattle, USA.
Genevestigator - Multi-organism microarray database and expression meta-analysis tool.
IRES Database - Database on gene expression with information on Internal Ribosome Entry Sites IRES. From INSERM, the French Institute of Health.
Kyoto Encyclopedia of Genes and Genomes (KEGG) - Graphical and hypertext-based information on biochemical pathways, including metabolic and regulatory pathways cell cycle and growth factor signaling. From Kanehisa Laboratories in the Bioinformatics Center of Kyoto University, Japan.
MERNA - A data base of metal binding sites of RNA, from the Holbrooke Laboratory, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Mirage - Information methodologies, tools, and technologies relating to the study of gene expression and signal transduction. From the Institute for Transcriptional Informatics (IFTI), USA.
Novartis Gene Expression Atlas - Database on gene expression in men and mice.
Ribosomal Database Project - From Center for Microbial Ecology, Michigan State University, USA
Rice Transcription Factor Database - RiceTFDB is a public database of rice genes involved in transcriptional control. From the University of Potsdam, Berlin, Germany.
RNase P Database - A compilation of RNase P sequences, sequence alignments, secondary structures, three-dimensional structures, and accessory information.
Stanford Microarray Database - Data from microarray experiments, and the corresponding image files. From Stanford University, USA.
SymAtlas - Database on gene function and structure, from the Genomics Institute of the Novartis Research Foundation.
WormBase - Data bases on the genetics of C elegans and related nematodes. Help build the largest human-edited directory on the web.